Epitope Prediction Services
Expert Computational Epitope Mapping for Vaccines & Therapeutics
At Biointelix, we specialize in advanced epitope prediction services designed to accelerate your vaccine design, antibody discovery, and immunotherapy development. Our immunoinformatics pipeline leverages cutting-edge algorithms and structural biology to identify high-confidence B-cell and T-cell epitopes.
What is an Epitope?
An epitope—or antigenic determinant—is the specific region of an antigen recognized by the immune system (B cells, T cells, or antibodies). Predicting epitopes enables targeted vaccine design and the development of diagnostic and therapeutic biologics.
Types of Epitopes
- Linear (Continuous) Epitopes: Identified by sequence-based analysis, ideal for peptide vaccines and diagnostics.
- Conformational (Discontinuous) Epitopes: Require 3D structure modeling; critical for antibody binding and immune response.
Both epitope types are essential in immune recognition and targeted biomedical design
Why Epitope Prediction Matters
Our epitope prediction services help researchers::
- Minimize wet-lab trial-and-error
- Identify top candidate regions for immunogenicity
- Support rational vaccine and antibody design
- Streamline cancer immunotherapy and autoimmune research
- Perform allergenicity and HLA population coverage analysis
Biointelix Epitope Prediction Services
We offer end-to-end epitope prediction solutions tailored for research teams, biotech companies, and pharmaceutical developers.
B-Cell Epitope Prediction
Linear B-Cell Epitope Mapping
Using sequence-based analysis, we identify linear epitopes for use in subunit and peptide vaccines.
Conformational Epitope Prediction
Structure-based algorithms model discontinuous epitopes to support neutralizing antibody development
Case Example: HA RBD of Influenza A Virus
Biointelix identifies high-specificity B-cell epitopes on hemagglutinin (HA), aiding precision vaccine targeting.
Table containing Predicted Linear B-cell epitopes

At Biointelix, we offer state-of-the-art epitope prediction services powered by cutting-edge bioinformatics tools and expert scientific insight. Our services are designed to support your immunological research and development pipeline from early discovery through preclinical design.
Image representing Predicted Discontinous B-cell Epitopes

Using 3D structure-based computational tools, Biointelix predicts conformational (discontinuous) B-cell epitopes on the HA RBD of Influenza A. Our epitope prediction services help researchers target structural epitopes crucial for neutralizing antibody responses.
Accurate epitope identification often depends on reliable structural models. That’s why our Protein Structure Prediction Services
provide high-quality 3D protein structures to support precise epitope mapping and vaccine design.
T-Cell Epitope Prediction
MHC Class I & II Binding Predictions
Tools like NetMHCpan and IEDB predict strong CTL and helper T-cell epitopes.
Case Example: CTL Epitopes from Influenza A RBD
We map T-cell epitopes with high MHC binding confidence for use in personalized immunotherapy and mRNA vaccines.
Table listed Cytotoxic T Lymphocyte (CTL) Epitope Prediction

Biointelix identifies cytotoxic T lymphocyte (CTL) epitopes from the Influenza A HA RBD using immunoinformatic pipelines. Our epitope prediction services support T-cell-based vaccine design and immunotherapy development with high-confidence MHC-binding predictions.
Additional Features
Epitope Mapping from FASTA or PDB
Upload a sequence or structure—we’ll deliver a full epitope map.
Population Coverage & Allergenicity
Assess immunogenicity, allergenicity, and HLA coverage for global vaccine effectiveness.
Custom Reports & Data Visualization
Get detailed, publication-ready outputs with interactive epitope mapping visuals.
Why Choose Biointelix for Epitope Prediction Services?
- Immunoinformatics Expertise: Deep experience in B-/T-cell epitope mapping
- Flexible Input Options: Accept FASTA, genome, or 3D structures
- Fast Turnaround: Rapid results with high accuracy
- Confidential & Secure: Your data is safe with us
Ready to Accelerate Your Research?
Partner with Biointelix to access accurate and customizable epitope prediction services that streamline biomedical research and development.
- Contact: Get in touch
Recent Publications in Epitope prediction
To highlight the rapid progress in the field, here are some notable recent studies that demonstrate the growing applications of epitope prediction and modeling:
(These external publications are provided as examples of the wider scientific advances in epitope prediction)